Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Bartley, J. 2019. Darwin’s fishes?: Keeping Malawi cichlids. Animal Technology and Welfare 18(3), 199-202.

This poster will provide information on the cichlids, including their dietary and husbandry requirements and the breeding of these animals.

Carbia, P. S., Brown, C. 2019. Environmental enrichment influences spatial learning ability in captive-reared intertidal gobies (Bathygobius cocosensis). Animal Cognition 22(1), 89–98.

Behavioural plasticity is an advantageous trait for animals living in dynamic environments, and can be induced through learning. While some behavioural traits are innate, others are framed by experience and learning during an individual’s lifetime...

Golledge, H., Carter, E. 2018. Welfare of fish farmed in the EU during transport and at slaughter. Animal Welfare 27(3), 287-288.

This Report, commissioned by the European Commission, summarises the current state of transport and slaughter practices in the aquaculture industry within eleven case-study countries in the European Economic Area (EAA). Comparisons are also made with...

Chatigny, F., Creighton, C. M., Stevens, E. D. 2018. Updated review of fish analgesia. JAALAS 57(1), 5-12.

Analgesics are an integral part of routine pain management in mammals, yet their use in fish is still limited. Some recommendations on the use of analgesics in fish are currently in the literature; however, information...

Balko, J. A., Oda, A., Posner, L. P. 2018. Use of tricaine methanesulfonate or propofol for immersion euthanasia of goldfish (Carassius auratus). Journal of the American Veterinary Medical Association 252(12), 1555-1561.

OBJECTIVE To substantiate current AVMA guidelines for immersion euthanasia of goldfish (Carassius auratus) with tricaine methanesulfonate (TMS), determine whether immersion in propofol at 5 times its immersion anesthesia concentration for 30 minutes is sufficient for...

Mellor, E., Brilot, B., Collins, S. 2018. Abnormal repetitive behaviours in captive birds: a Tinbergian review. Applied Animal Behaviour Science. 198, 109-120.

Abnormal repetitive behaviours (ARBs) are associated with past, or present, welfare problems and are common elements of the behavioural repertoire of some captive animals, including birds. Millions of birds from hundreds of species are held...

dos Santos Gauy, A. C., Pereira Boscolo, C. N., Gonçalves-de-Freitas, E. 2018. Less water renewal reduces effects on social aggression of the cichlid Pterophyllum scalare. Applied Animal Behaviour Science. 198, 121-126.

Changes in aquatic environments can affect fish behavior. Water renewal, for example, can dilute chemical signals, which are a social communication tool used by some fish species, and this dilution increases aggressive interactions in the...

Lopes, A. C. C., Villacorta-Correa, M. A., Carvalho, T. B. 2018. Lower light intensity reduces larval aggression in matrinxã, Brycon amazonicus. Behavioural Processes 151, 62-66.

Brycon amazonicus shows a high frequency of aggressive behavior, which can be a limiting factor in intensive farming systems. Environmental changes can modulate the social interactions of fish and reduce aggression during the different stages...

Freret-Meurer, N. V., Alves, M. A. S. 2018. Personality in the longsnout seahorse, Hippocampus reidi Ginsburg, 1933: Are males shyer than females? Behavioural Processes 157, 106-110.

Individual responses, particularly based on personality, can have important consequences for individual fitness, based upon success in exploring new habitats, feeding on novel foods, and aggressiveness in competitive interactions. We conducted laboratory experiments to analyze...

O’Rourke, D. P., Baccanale, C. L., Stoskopf, M. K. 2018. Nontraditional laboratory animal species (cephalopods, fish, amphibians, reptiles, and birds). ILAR Journal 59(2), 168-176.

Aquatic vertebrates and cephalopods, amphibians, reptiles, and birds offer unique safety and occupational health challenges for laboratory animal personnel. This paper discusses environmental, handling, and zoonotic concerns associated with these species.

Christensen, E. A. F., Grosell, M. 2018. Behavioural salinity preference of juvenile yellow perch Perca flavescens. Journal of Fish Biology 92(5), 1620-1626.

The present study determined the behavioural salinity preference of a freshwater stock of juvenile yellow perch Perca flavescens acclimated to salinities of 0 and 10. The preferred salinities ranged between 7.3 and 13.0 (mean ±...

Boucher, M. A., Baker, D. W., Brauner, C. J. et al. 2018. The effect of substrate rearing on growth, aerobic scope and physiology of larval white sturgeon Acipenser transmontanus. Journal of Fish Biology 92(6), 1731-1746.

The effect of substratum on growth and metabolic rate was assessed in larval white sturgeon Acipenser transmontanus. Yolk-sac larvae (YSL) were reared in bare tanks or tanks with gravel as substratum from hatch until approximately...

Allen, P. J., Baumgartner, W., Brinkman, E. et al. 2018. Fin healing and regeneration in sturgeon. Journal of Fish Biology 93(5), 917-930.

Pectoral fin healing in fin spines and rays were examined in juvenile Atlantic sturgeon Acipenser oxyrinchus oxyrinchus following three different sampling techniques (n = 8-9 fish per treatment): entire leading fin spine removed, a 1-2...

Darbyshire, A. K., Salleng, K., Chen,P. 2018. The shocking lives of electric eels. Laboratory Animal Science Professional 6(1) (March), 14-18.

Electric eels (Electrophorus electricus) are a unique species used for behavioral research in the Vanderbilt Animal Care and Use Program. Few resources are available to describe the housing and handling of this species in captivity...

Chatigny, F., Kamunde, C., Creighton, C. M. et al. 2017. Uses and doses of local anesthetics in fish, amphibians, and reptiles. JAALAS 56(3), 244-253.

Local anesthetics are an integral part of routine pain management in mammals, yet their use is relatively limited in fish, amphibians and reptiles. These animals frequently undergo potentially painful surgical procedures and therefore could possibly...

Breacker, C., Tilley, C. 2017. DNA sampling by skin swabbing for Zebrafish (Danio rerio) and sticklebacks (Gasterosteus aculeatus). Animal Technology and Welfare 16(3), 211-213.

Fin clipping of live fish under anaesthesia is widely used to collect tissues samples for DNA extraction. However, this technique raises a number of ethical concerns, since the use of anaesthetic and/or physical fin damage...

Ludwig, S. C., Kapetanopoulos, K., Kotrschal, K. et al. 2017. Effects of mate separation in female and social isolation in male free-living Greylag geese on behavioural and physiological measures. Behavioural Processes 138, 134-141.

The presence of a social partner may significantly contribute to coping with stressful events, whereas dyadic separation generally increases glucocorticoid levels and, thereby, might also affect immune function and health. To study the covariation between...

Ullah, I., Zuberi, A., Khan, K. U. et al. 2017. Effects of enrichment on the development of behaviour in an endangered fish mahseer (Tor putitora). Applied Animal Behaviour Science 186, 93-100.

Structural enrichment in the rearing environment, not only promotes fish welfare, but also affects several aspects of behavioural biology of fish in aquaculture. Here an attempt was made to use physical-enrichment to improve the behaviour...

Yin, L., Yang, H., Xu, L. et al. 2017. Feather performance, walking ability, and behavioral changes of geese in response to different stocking densities. Applied Animal Behaviour Science 196, 108-112.

In recent decades, goose production has become more specialized and widespread, and rearing geese in plastic wire-floor pens is common in China. This type of rearing pattern is more productive than other rearing patterns since...

Burton, D., Burton, M. (Eds). 2017. Essential Fish Biology: Diversity, Structure and Function. Oxford University Press: Oxford, U.K., 448 pp.

This book summarizes the basic features of living fish. It is introduced by a chapter on the diversity of a group which has over 30,000 species, the largest within the vertebrates, describing the classification systems...

Stevens, C. H., Croft, D. P., Paull, G. C. et al. 2017. Stress and welfare in ornamental fishes: What can be learned from aquaculture? Journal of Fish Biology 91(2), 409-428.

The ornamental fish trade is estimated to handle up to 1.5 billion fishes. Transportation and handling of fishes imposes a range of stressors that can result in mortality at rates of up to 73%. Given...

Costa, D. C., Mattioli, C. C., Silva, W. S. et al. 2017. The effect of environmental colour on the growth, metabolism, physiology and skin pigmentation of the carnivorous freshwater catfish Lophiosilurus alexandri. Journal of Fish Biology 90(3), 922-935.

The growth, physiology and skin pigmentation of pacamã Lophiosilurus alexandri juveniles were evaluated in an experiment using different tank colours (white, yellow, green, blue, brown and black) over an 80-day period. The tank colours did...

Hesse, S., Bakker, T. C. M. , Baldauf, S. A. et al. 2016. Impact of social environment on inter- and intrasexual selection in a cichlid fish with mutual mate choice. Animal Behaviour 111, 85-92.

Social-rearing environment has profound effects on behaviour, physiology and development. A complex social environment enhances an individual's social skills and competence in many animal taxa. Consequently, complete social deprivation seriously impairs various aspects of behaviour...

Jolles, J. W., Aaron-Taylor, B., Manica, A. 2016. Recent social conditions affect boldness repeatability in individual sticklebacks. Animal Behaviour 112, 139-145.

Animal personalities are ubiquitous across the animal kingdom and have been shown both to influence individual behaviour in the social context and to be affected by it. However, little attention has been paid to possible...

Herrera, M., López, J., Herves, A. 2016. A preliminary approach on the stress assessment through harmless procedures in farmed seabream (Sparus aurata). Animal Welfare 25(4), 423-427.

Fish welfare is a key factor in ensuring successful cultures. Farmed fish that are stressed have been shown to be susceptible to pathologies and present lower growth rates. The present work seeks to check the...